Do you simply want to make a CD of the show to listen to on your stereo or whatever? There is no reason to convert SHN files into FLAC files before making a CD. SHN and FLAC are both (lossless) compressed files that can be converted to WAV files before burning to CD. With FLAC you've been using FLAC FrontEnd. With SHN try mkwACT. It's here:
http://www.etree.org/mkw.html.
Once installed, highlight all the SHN files. Right click the selected files, and select convert to WAV (I think that's what it says).
Anyway, I think I understand your question and there is no reason to convert to FLAC.
Rob
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