OK, to all those people who have been scared off by installing and/or using shntool, the first shntool graphical interface for multiple file formats is here. I have released this program though the Sourceforge page, and am looking for some people to run through some alpha tests.
https://sourceforge.net/projects/audiophilia/
This is NOT fully functional yet, so if you're looking for a mature product, you're going to have to wait for another month or so. Right now, the program will only generate md5, ffp, and shntool md5s from a folder full of shn/flac/ape files. But it will also install shntool and the binaries, which has provided a good deal of people difficulty. This is a major step, and Audiophilia is the first program with an automated windows installer interface for shntool.
Note that this product has only been tested on my system, and I need detailed feedback from people on how to improve/build this product. Please download and help me make this a foolproof utility for working with shntool.
Also, if anyone has experience with Visual Basic and would like to review the code and offer advice, please let me know and I can add you to the Sourceforge project.
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